software Installing and Managing Bioinformatics Software with Conda One of the first hurdles when getting started with cloud computing is understanding how to best install and manage the software you wish to use for your analyses. Fortunately, this can be a breeze thanks to the package management system known as Conda.
server Creating a Custom BLAST Server with SequenceServer BLAST (Basic Local Alignment Search Tool) is a popular bioinformatics tool for finding regions of similarity between sequences. With RONIN and SequenceServer, you can set up your own custom BLAST server in just a few simple steps.
conda Adding a Conda Environment to Jupyter Notebook We will show you how easy it is to create a conda environment and adding it to your Jupyter notebook. If you haven't launched a Jupyter notebook on RONIN, you'll want to read the Accessing a Jupyter notebook with RONIN on how to do so before
jupyter Accessing a Jupyter Notebook with RONIN First up let's fire up a new Ubuntu machine. If you need a reminder on how to do that click here. Note: Some pre-configured software packages, such as the Deep Learning packages, will already come with Jupyter Notebook installed. You can select one of these packages instead of
docker Create and Connect to a Docker Machine with RONIN Watch this video to see how easy it is to create and connect to a Docker machine.
ganglia Ganglia on Auto Scale Clusters All RONIN Clusters get a free open source tool called Ganglia to help monitor your hardware. This article shows you how
rstudio Creating and Connecting to RStudio with RONIN LINK In this video, we will show you how to get started with RStudio in RONIN, from creating a new machine with RStudio installed, to accessing it through your web browser via RONIN LINK
